Domain Specific Details

• Engineering: ANSYS Products
  • Log in to Spruce
  • Create an interactive job
  • Load the module for ANSYS Fluids or Structures
  • Executing the ANSYS package of your choice
• Engineering: ANSYS/Forte
  • Overview
  • Features
  • Tutorial
• Engineering: Running OpenFOAM simple tutorial
  • Load modules
  • Run OpenFOAM
  • Using ParaView with OpenFoam
• Bioinformatics: Conda and BioConda
  • Preparing the environment
  • Knowing which environments are available
  • Activating an existing environment
  • Deactivating the current environment
  • Creating a new environment from a YML file
  • Listing the packages inside one environment
  • Using a conda environment in a submission script
  • Deleting a environment
  • More documentation
• Bioinformatics: Using Bowtie2
  • 1. Transfer the files
  • 2. Preparing folders
  • 3. Splitting the files
  • 4. Using BSseeker2
  • 4. Checking completion for all jobs
• Matlab: Running Matlab scripts on a HPC cluster
  • Executing Matlab scripts
  • Using the Matlab Compiler
• Visualization: VisIt
  • Introduction
  • Client Installation
  • Running VisIt in the Client/Server Model