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1.0
  • Introduction
  • Quick Start
  • For Basic Users
  • For Advanced Users
    • Conda and BioConda
    • Singularity Containers
    • Singularity Containers
    • Installing Packages in User Locations
    • Miniconda
    • Using MPI on RC HPC Clusters
    • Executing HADOOP jobs
    • Python Modules
    • Python and scientific libraries
    • Python Virtual Environments
  • For Developers
  • For Administrators
  • Domain Specific Details
  • Clusters Specifications
  • References
WVU-RC
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  • For Advanced Users
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For Advanced Users¶

  • Conda and BioConda
  • Singularity Containers
    • How to use a singularity Image
    • Central Installed Singularity Images
  • Singularity Containers
  • Installing Packages in User Locations
    • Overview: GNU Build System
    • Additional Documentation
  • Miniconda
    • Downloading Miniconda
    • No installing anything
    • Installing QIIME on a virtual environment on top of python 2.7.13
    • Installing QIIME on top of python 2.7.13 (No virtual env)
    • Installing with Miniconda
  • Using MPI on RC HPC Clusters
    • MPI Standards
    • Useful Books
    • Libraries
  • Executing HADOOP jobs
    • What is Hadoop
    • Using Hadoop on the cluster
    • R Interface with Hadoop - Rhipe
    • Further Information
  • Python Modules
    • Python User Flag
    • Python Home/Prefix Flag
    • Virtual Environments
    • Using install.packages()
    • Using R CMD INSTALL
    • Using Installed Packages from non-default directories
  • Python and scientific libraries
    • Packages included
    • Libraries included
    • Notes from building
  • Python Virtual Environments
    • Using Virtual Environments with python2
    • Using Virtual Environments with python3
    • Activating virtual environments using the C shell
    • Using site-wide system packages
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© Copyright 2018, Guillermo Avendano-Franco

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