For Advanced Users

• Conda and BioConda
• Singularity Containers
  • How to use a singularity Image
  • Central Installed Singularity Images
• Singularity Containers
• Installing Packages in User Locations
  • Overview: GNU Build System
  • Additional Documentation
• Miniconda
  • Downloading Miniconda
  • No installing anything
  • Installing QIIME on a virtual environment on top of python 2.7.13
  • Installing QIIME on top of python 2.7.13 (No virtual env)
  • Installing with Miniconda
• Using MPI on RC HPC Clusters
  • MPI Standards
  • Useful Books
  • Libraries
• Executing HADOOP jobs
  • What is Hadoop
  • Using Hadoop on the cluster
  • R Interface with Hadoop - Rhipe
  • Further Information
• Python Modules
  • Python User Flag
  • Python Home/Prefix Flag
  • Virtual Environments
  • Using install.packages()
  • Using R CMD INSTALL
  • Using Installed Packages from non-default directories
• Python and scientific libraries
  • Packages included
  • Libraries included
  • Notes from building
• Python Virtual Environments
  • Using Virtual Environments with python2
  • Using Virtual Environments with python3
  • Activating virtual environments using the C shell
  • Using site-wide system packages